Index

A

AABBInfo (class in cliputil) activity_log_message() (xfworkerutil.XFWorkerJob method) ActivityLogLevel (class in xfworkerutil) additional_pixels_filenames (omni.Image property) after_last() (in module xfsortorder) aimio module AimReader (class in aimio) AimWriter (class in aimio)

AlphaLUTHardcoded (class in lifsnapshot) append_field() (aimio.ProcessingLog method) append_min_max_data_values() (aimio.ProcessingLog method) append_min_max_data_values_from_pixels() (aimio.ProcessingLog method) append_parameter_name_and_units() (aimio.ProcessingLog method) append_parameter_seg() (aimio.ProcessingLog method) AuthorizationToken (class in network) AuthorizationToken.AuthorizationScope (class in network) AvgInfo (class in cliputil)

B

basic_authentication() (in module network) bearer_authentication() (in module network) before_first() (in module xfsortorder)

between() (in module xfsortorder) border_size (omni.InvalidPixels property) BulkChunk (class in lifsnapshot)

C

calibrated_to_raw() (omni.Calibration method) Calibration (class in omni) Calibrations (class in aimio) Camera (class in lifsnapshot) CAReportLabelInfo (class in cliputil) check_all_read() (aimio.AimReader method) check_status() (network.Connection method) checked_aim_image() (in module iplutil) Chunk (class in lifsnapshot) clear_error_message() (xfworkerutil.XFWorkerJob method) CLIP cliputil module close() (network.Connection method) ComInfo (class in cliputil) common_prefix() (in module xfsortorder) configure_logging() (in module logutil) Connection (class in network) convert_ipl_syntax() (in module iplutil) create_activity_log_event() (in module xfworkerutil) create_empty_file() (in module cliputil) create_output_bitmap() (xfworkerutil.XFWorkerJob method) create_output_contours() (xfworkerutil.XFWorkerJob method)

create_output_csv() (xfworkerutil.XFWorkerJob method) create_output_entity() (xfworkerutil.XFWorkerJob method) create_output_foreign_file() (xfworkerutil.XFWorkerJob method) create_output_gi_result() (xfworkerutil.XFWorkerJob method) create_output_html_document() (xfworkerutil.XFWorkerJob method) create_output_image() (xfworkerutil.XFWorkerJob method) create_output_image_pair_list() (xfworkerutil.XFWorkerJob method) create_output_image_voi() (xfworkerutil.XFWorkerJob method) create_output_mesh() (xfworkerutil.XFWorkerJob method) create_output_path() (xfworkerutil.XFWorkerJob method) create_output_registration_result() (xfworkerutil.XFWorkerJob method) create_output_rotated_image_voi() (xfworkerutil.XFWorkerJob method) create_output_snapshot() (xfworkerutil.XFWorkerJob method) create_output_snapshot_metadata() (xfworkerutil.XFWorkerJob method) create_output_spectra() (xfworkerutil.XFWorkerJob method) create_output_video() (xfworkerutil.XFWorkerJob method) create_parameter() (in module xfworkerutil) create_related_path() (xfworkerutil.TemporaryWorkingDirectory method) (xfworkerutil.XFWorkerJob method) create_temp_path() (xfworkerutil.TemporaryWorkingDirectory method) (xfworkerutil.XFWorkerJob method) create_xf_job() (in module xfworkerutil) create_xf_task() (in module xfworkerutil)

D

Database debug_print_lifsnapshot() (in module lifsnapshot) default_pixel_calibration_unit_type (omni.Image property) delete() (network.Connection method) delete_empty_directory_on_filestorage() (in module network) delete_file_on_filestorage() (in module network) Dependency Package derive_image() (omni.Image method) derive_segments() (omni.Image method) detect_major_ipl_version() (in module iplutil)

dimensions (omni.Image property) DirectAccessHeader (class in network) download_additional_input_files() (xfworkerutil.XFWorkerJob method) download_input_file() (xfworkerutil.XFWorkerJob method) download_related_input_file() (xfworkerutil.XFWorkerJob method) download_xf_dependency_package_config_file() (xfworkerutil.XFWorkerJob method) download_xf_task_type_config_file() (xfworkerutil.XFWorkerJob method) download_xf_userdata_file() (xfworkerutil.XFWorkerJob method) download_xf_workflow_config_file() (xfworkerutil.XFWorkerJob method) DRain

E

ensure_pixels_loaded() (omni.Image method) error() (xfworkerutil.XFWorkerJob method)

extract_raw_pixels_file() (in module cliputil) extract_raw_uint8_pixels_file() (in module cliputil)

F

File Storage Service file_exists_on_filestorage() (in module network) find_xf_task_type() (xfworkerutil.XFWorkerJob method) find_xf_task_types() (xfworkerutil.XFWorkerJob method) finish() (xfworkerutil.XFWorkerJob method) Follower Task format (omni.Image property) format_version() (in module xfworkerutil)

from_chunks() (lifsnapshot.AlphaLUTHardcoded static method) (lifsnapshot.Camera static method) (lifsnapshot.LightEnv static method) (lifsnapshot.MeshGroup static method) (lifsnapshot.MeshSet static method) (lifsnapshot.WindowLevel static method) from_numpy_array() (omni.Image static method) FSS

G

get() (network.Connection method) get_bool() (lifsnapshot.Chunk method) get_color() (lifsnapshot.Chunk method) get_current_task() (xfworkerutil.XFWorkerJob method) get_debug_info() (xfworkerutil.XFWorkerJob method) get_error_response_json_message() (network.Connection method) get_exe_path() (in module cliputil) (in module hero6util) get_existing_job_sort_orders() (xfworkerutil.XFWorkerJob method) get_file_from_filestorage() (in module network) get_file_size_from_filestorage() (in module network) get_float() (iplutil.ParsedIPLParameter method) get_float32_lut() (lifsnapshot.AlphaLUTHardcoded method) get_float64() (lifsnapshot.Chunk method) get_float64_2d() (lifsnapshot.Chunk method) get_float64_3d() (lifsnapshot.Chunk method) get_int32() (lifsnapshot.Chunk method) get_int32_2d() (lifsnapshot.Chunk method) get_int32_3d() (lifsnapshot.Chunk method) get_int64() (lifsnapshot.Chunk method) get_ipl_exe_path() (in module iplutil) get_ipl_image_path() (xfworkerutil.XFWorkerJob method) get_json() (network.Connection method) get_mpi_ntask_default() (in module runutil) get_new_source_job_sort_order() (in module xfsortorder) get_new_source_job_sort_orders() (in module xfsortorder) get_new_source_job_sort_orders_directly_after() (in module xfsortorder) get_omni_image() (xfworkerutil.XFWorkerJob method) get_or_extract_raw_file_and_pipe_float32_pixels() (in module cliputil) get_or_extract_raw_float32_pixels_file() (in module cliputil) get_or_extract_raw_pixels_file() (in module cliputil) get_or_extract_raw_uint8_pixels_file() (in module cliputil) get_parameter_file_references() (in module xfworkerutil) get_parameter_file_token() (in module xfworkerutil) get_regex_pattern_full_line() (iplutil.IPLParameterParser method) get_regex_pattern_one_of() (iplutil.IPLParameterParser method) get_relative_voi_pos_of_target_image() (omni.Image method)

get_run_entity() (xfworkerutil.XFWorkerJob method) get_sns_meas_dir_token() (in module network) get_sns_meas_file_token() (in module network) get_sns_server_connection() (in module xfworkerutil) get_sns_token() (in module network) get_str() (lifsnapshot.Chunk method) get_transform() (lifsnapshot.Chunk method) get_uint32() (lifsnapshot.Chunk method) get_uint8() (lifsnapshot.Chunk method) get_virtualpath_dirname() (in module network) get_virtualpath_filename() (in module network) get_xf_combined_query() (in module xfworkerutil) get_xf_default_sns_server_connection_params() (in module xfworkerutil) get_xf_dependency_package_config_token() (in module xfworkerutil) get_xf_job() (in module xfworkerutil) get_xf_job_log_token() (in module xfworkerutil) get_xf_job_result_token() (in module xfworkerutil) get_xf_jobs_by_task() (in module xfworkerutil) get_xf_jobs_by_workflow() (in module xfworkerutil) get_xf_parameter_float_sequence() (in module xfworkerutil) get_xf_parameter_paired_float_sequences() (in module xfworkerutil) get_xf_parameter_sequence() (in module xfworkerutil) get_xf_project() (in module xfworkerutil) get_xf_projects() (in module xfworkerutil) get_xf_task() (in module xfworkerutil) get_xf_task_config_token() (in module xfworkerutil) get_xf_task_type() (in module xfworkerutil) get_xf_task_type_config_token() (in module xfworkerutil) get_xf_task_types() (in module xfworkerutil) get_xf_tasks_by_workflow() (in module xfworkerutil) get_xf_userdata_token() (in module xfworkerutil) get_xf_workflow() (in module xfworkerutil) get_xf_workflow_config_token() (in module xfworkerutil) get_xf_workflow_run() (in module xfworkerutil) get_xf_workflows_by_project() (in module xfworkerutil) get_xml_element_text() (network.AuthorizationToken method) GluePositionsInfo (class in cliputil) GlueTilePositionInfo (class in cliputil)

H

head_response() (network.Connection method) Hero 6 hero6util module

HierarchyChunk (class in lifsnapshot) HistoInfo (class in cliputil) hook_exceptions() (xfworkerutil.XFWorkerJob method)

I

Image (class in omni) image_relations (omni.Image property) ImageRelation (class in omni) import_from_aim() (in module omni) import_from_isq() (in module omni) import_from_mlsd() (in module omni) indirect_base_unit_type (omni.Calibration property) inherit_env() (in module runutil) inherit_metadata() (omni.Image method) Interactive Task intercept (omni.Calibration property) invalid_pixels (omni.Image property) InvalidLIFSnapshot InvalidPixels (class in omni)

IPL ipl_args() (in module iplutil) IPLParameterParser (class in iplutil) IplStdoutChecker (class in iplutil) iplutil module is_bulk_chunk_type() (in module lifsnapshot) is_chunk_type_mode() (in module lifsnapshot) is_direct_access_possible() (network.DirectAccessHeader method) is_generic_chunk_type() (in module lifsnapshot) is_hierarchic_chunk_type() (in module lifsnapshot) is_mpi_installed() (in module runutil) is_standard_chunk_type() (in module lifsnapshot) isotropic_pixel_size_mm() (omni.Image method) ItemChunk (class in lifsnapshot)

J

Job	job_serial (xfworkerutil.XFWorkerArguments property)

L

lifsnapshot module LightEnv (class in lifsnapshot) list_files_and_folders_on_filestorage() (in module network) list_files_on_filestorage() (in module network) load() (omni.Image static method) load_aim() (in module aimio) load_job() (xfworkerutil.XFWorkerJob method)

load_lifsnapshot() (in module lifsnapshot) log_time() (in module logutil) logutil module Lucid CLIP Lucid DRain Lucid Hero 6 Lucid LUPO LUPO

M

many_after_last() (in module xfsortorder) many_after_prefix() (in module xfsortorder) many_between() (in module xfsortorder) MeshGroup (class in lifsnapshot) MeshSet (class in lifsnapshot) module aimio cliputil hero6util iplutil lifsnapshot logutil network omni runutil xfsortorder xfworkerutil

N

name (omni.PixelValueObject property)

network module

O

OMNI omni module

optional_env() (in module cliputil) (in module hero6util)

P

Package parse() (iplutil.IPLParameterParser method) parse_aabb_result() (in module cliputil) parse_avg_result() (in module cliputil) parse_calibrations() (aimio.ProcessingLog method) parse_com_result() (in module cliputil) parse_count_result() (in module cliputil) parse_glue_positions_txt() (in module cliputil) parse_histo_result() (in module cliputil) parse_ipl_parameter() (in module iplutil) parse_ipl_whitespace_parameter() (in module iplutil) parse_max_data_value() (aimio.ProcessingLog method) parse_min_data_value() (aimio.ProcessingLog method) parse_parameter_units() (aimio.ProcessingLog method) parse_poptop_result() (in module cliputil) parse_runtop_result() (in module cliputil) parse_var_result() (in module cliputil) parse_version() (in module xfworkerutil) ParsedIPLParameter (class in iplutil) percent_encode_relaxed_virtualpath() (in module network) pipe_aabb() (in module cliputil) pipe_and() (in module cliputil) pipe_aof() (in module cliputil) pipe_avg() (in module cliputil) pipe_com() (in module cliputil) pipe_count() (in module cliputil) pipe_curv() (in module cliputil) pipe_down() (in module cliputil) pipe_evalp() (in module cliputil) pipe_f2i() (in module cliputil) pipe_histo() (in module cliputil) pipe_i2f() (in module cliputil) pipe_lapl() (in module cliputil) pipe_or() (in module cliputil) pipe_pad() (in module cliputil)

pipe_poptop() (in module cliputil) pipe_putroi() (in module cliputil) pipe_roi() (in module cliputil) pipe_runtop() (in module cliputil) pipe_sel() (in module cliputil) pipe_thr() (in module cliputil) pipe_up() (in module cliputil) pipe_var() (in module cliputil) pipe_xyt() (in module cliputil) PipeProcessInfo (class in runutil) pixel_calibrations (omni.Image property) pixel_calibrations_of_unit_type() (omni.Image method) pixel_max_value (omni.Image property) pixel_min_value (omni.Image property) pixel_size_mm (omni.Image property) pixel_size_mm_3d (omni.Image property) pixel_type (omni.Image property) pixel_value (omni.PixelValueObject property) pixel_value_objects (omni.Image property) pixels (omni.Image property) pixels_compression (omni.Image property) pixels_count (omni.Image property) pixels_file_data_offset (omni.Image property) pixels_filename (omni.Image property) PixelValueObject (class in omni) PopTopInfo (class in cliputil) post() (network.Connection method) post_json() (network.Connection method) PostgreSQL Processing Task ProcessingLog (class in aimio) progress() (xfworkerutil.XFWorkerJob method) put() (network.Connection method) put_file_to_filestorage() (in module network) put_json() (network.Connection method)

Q

quote_for_cmd_exe() (in module runutil) quote_for_subprocess() (in module runutil)

quote_naively() (in module runutil) quoted_path() (in module iplutil)

R

raw_stddev_to_calibrated_stddev() (omni.Calibration method) raw_to_calibrated() (omni.Calibration method) raw_variance_to_calibrated_variance() (omni.Calibration method) read_chunk_header() (in module lifsnapshot) read_chunks() (in module lifsnapshot) read_compact() (in module lifsnapshot) read_header() (in module lifsnapshot) read_size_file() (in module cliputil) read_unpack() (in module lifsnapshot) remove() (xfworkerutil.TemporaryWorkingDirectory method) remove_image_relation() (omni.Image method) request_with_retry() (network.Connection method) resave_all() (omni.Image method) resave_compressed() (omni.Image method) RFC RFC 5280 Run run() (in module runutil) run_aabb() (in module cliputil) run_and() (in module cliputil) run_aof() (in module cliputil) run_avg() (in module cliputil) run_bsp_rotate() (in module cliputil) run_ca() (in module cliputil) run_ca_intersected_by_seed() (in module cliputil) run_ca_main() (in module cliputil) run_ca_range() (in module cliputil) run_ca_rank() (in module cliputil) run_ca_report() (in module cliputil) run_ca_seld() (in module cliputil) run_collapse() (in module cliputil) run_com() (in module cliputil) run_count() (in module cliputil) run_curv() (in module cliputil) run_curv3d() (in module cliputil) run_dct_rsmpl() (in module cliputil) run_dctf() (in module cliputil) run_down() (in module cliputil) run_eik() (in module cliputil)

run_evalp() (in module cliputil) run_f2i() (in module cliputil) run_gi() (in module cliputil) run_glue() (in module cliputil) run_histo() (in module cliputil) run_i2f() (in module cliputil) run_ipl() (in module iplutil) run_ipl_content() (in module iplutil) run_lapl() (in module cliputil) run_mir() (in module cliputil) run_morph_dilate_erode() (in module cliputil) run_morph_open_close() (in module cliputil) run_mpi() (in module runutil) run_msh_iso() (in module cliputil) run_nlf() (in module cliputil) run_or() (in module cliputil) run_pad() (in module cliputil) run_pipe() (in module runutil) run_poptop() (in module cliputil) run_putroi() (in module cliputil) run_rast() (in module hero6util) run_reconstruction() (in module runutil) run_roi() (in module cliputil) run_rscript() (in module runutil) run_runtop() (in module cliputil) run_sdt() (in module cliputil) run_sdt_morph() (in module cliputil) run_sel() (in module cliputil) run_thk() (in module cliputil) run_thn() (in module cliputil) run_thr() (in module cliputil) run_thrd() (in module cliputil) run_up() (in module cliputil) run_var() (in module cliputil) run_vec() (in module cliputil) run_xyt() (in module cliputil) RunTopInfo (class in cliputil) runutil module

S

save_aim() (in module aimio) save_all() (omni.Image method) save_derived_image() (omni.Image method) save_derived_segments() (omni.Image method) save_job() (xfworkerutil.XFWorkerJob method) save_metadata() (omni.Image method) save_pixels() (omni.Image method) save_pixels_as() (omni.Image method) Segments() (in module omni) segments_type (omni.Image property) Sequence Server server_auth (xfworkerutil.XFWorkerArguments property) server_connection() (xfworkerutil.XFWorkerJob method) server_host (xfworkerutil.XFWorkerArguments property) server_port (xfworkerutil.XFWorkerArguments property) set_default_image_relation() (omni.Image method) set_error_message() (xfworkerutil.XFWorkerJob method) set_estimated_duration() (xfworkerutil.XFWorkerJob method)

set_file_size() (in module cliputil) set_image_relation() (omni.Image method) set_or_add_voi_pixel_position() (omni.ImageRelation method) single() (in module xfsortorder) size (omni.Image property) size_3d (omni.Image property) size_3d_tuple (omni.Image property) slope (omni.Calibration property) Snapshot (class in lifsnapshot) SnapshotView (class in lifsnapshot) SNS sns_translate_logical() (in module network) Source Task spawn_xf_job_basic() (xfworkerutil.XFWorkerJob method) spawn_xf_task_basic() (xfworkerutil.XFWorkerJob method) spawn_xf_task_type_basic() (xfworkerutil.XFWorkerJob method) startupinfo() (in module runutil) subdir() (xfworkerutil.TemporaryWorkingDirectory method) SWAP switch_to_interactive_mode() (xfworkerutil.XFWorkerJob method)

T

Task Task Type Task Type Package TemporaryWorkingDirectory (class in xfworkerutil) try_get_direct_access_path() (in module network)

try_parse_response_header() (network.DirectAccessHeader static method) try_parse_virtualpath_schema_sns_measurement() (in module network) type (omni.Calibration property) (omni.Image property) (omni.ImageRelation property) (omni.InvalidPixels property)

U

UnexpectedStatusError unit_name (omni.Calibration property) unit_type (omni.Calibration property) unprocessed_delete_response() (network.Connection method) unprocessed_get_response() (network.Connection method) unprocessed_head_response() (network.Connection method) unprocessed_post_response() (network.Connection method) unprocessed_put_response() (network.Connection method)

update_xf_job() (in module xfworkerutil) update_xf_project() (in module xfworkerutil) update_xf_task() (in module xfworkerutil) update_xf_workflow() (in module xfworkerutil) upload_omni_output() (xfworkerutil.XFWorkerJob method) upload_omni_output_only_metadata() (xfworkerutil.XFWorkerJob method) upload_output_file() (xfworkerutil.XFWorkerJob method) upload_xf_userdata_file() (xfworkerutil.XFWorkerJob method) User Data

V

VarInfo (class in cliputil) verify_pixel_type() (omni.Image method) virtualpath_join_file() (in module network) virtualpath_join_folder() (in module network)

virtualpath_parent_folder() (in module network) VOI voi_pixel_position (omni.ImageRelation property) Volume Of Interest

W

WindowLevel (class in lifsnapshot) Worker

Workflow Workflow Package

X

XamFlow XamFlow Desktop XamFlow Server XamFlow Worker Service XamFlow Workstation XF XF Desktop XF Server

XF Worker XF Workstation xfsortorder module XFWorkerArguments (class in xfworkerutil) XFWorkerJob (class in xfworkerutil) xfworkerutil module