Lucid.Util.ImportImageFromForeignFile

Import an image to OMNI file format from one of the supported file formats.

Supported Formats

  • OMNI (.omni)

  • AIM (.aim)

  • ISQ (.isq)

  • BMP (.bmp; 2D or optionally 2D slice stacks)

  • PNG (.png; 2D or optionally 2D slice stacks)

  • JPG (.jpg / ‘.jpeg’; 2D or optionally 2D slice stacks)

  • CZI (.czi; 3D or single 2D slice)

  • DICOM (.dcm; 3D or optionally 2D slice stacks)

  • DICOMDIR (dicomdir; 3D)

  • TIFF (.tif or .tiff; 3D or optionally 2D slice stacks)

  • NIFTI (.nii)

    • Compressed (.nii.gz renamed to .nii_gz or _nii.gz for compatibility reasons)

  • MATLAB (.mat; version 7.3 HDF format)

  • MHD (.mhd)

  • MHA (.mha; 3D or single 2D slice)

  • NRRD (.nrrd)

  • TXM (.txm or .xrm; .txrm unreconstructed)

  • Zeiss Exported raw (.bin / header.txt)

  • PAR / REC (.par / .rec)

  • MINC (.mnc)

  • ANALYZE (.hdr / .img)

  • SCV (.uint16_scv)

  • VGI (.vgi / .raw)

  • GOM Volume (.gom_volume / .raw)

  • PyHST VOLUME XML (.vol / .vol.xml)

  • HDF5 (.h5 or .hdf5)

  • Numpy array (.npy)

2D Slice Stacks

There is optional support for stacks of 2D image files:

  • The respective input parameter must be set.

  • The filenames must end in a sequential increasing integer number.

  • The selected input file must be the first slice.

  • The slice files must be accessed via the XF User Data mapping mechanism.