Example.Elastix.Transform¶
This task type uses Elastix’s Transformix command to apply a transformation another image.
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- Introduction
- What’s New
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- Case Studies
- Advanced Guides
- Administration
- Publications
- Additional Information
- Task Types
- ElmerFEM.FEA.BoundaryMask
- ElmerFEM.FEA.LinearElasticity
- Example.Basic.BlandAltmanPlot
- Example.Basic.BoxPlot
- Example.Basic.BoxPlotWithTTestIndependent
- Example.Basic.CitationsReport
- Example.Basic.CreateTestImage
- Example.Basic.DefineDateTime
- Example.Basic.DefineImageResolution
- Example.Basic.DefineTestImageParameters
- Example.Basic.DescriptiveStat
- Example.Basic.HistogramPlot
- Example.Basic.HTMLDocument
- Example.Basic.LiveProgress
- Example.Basic.OverrideDefaultCalibration
- Example.Basic.OverrideImagePixelsMinMax
- Example.Basic.OverrideImageRelationsMetadata
- Example.Basic.OverrideImageResolution
- Example.Basic.OverrideImageSegmentsType
- Example.Basic.PairPlot
- Example.Basic.PDF
- Example.Basic.PlotHeightmap
- Example.Basic.PlotHeightmapInteractive
- Example.Basic.PlotXY
- Example.Basic.PlotXYZ
- Example.Basic.PlotXYZInteractive
- Example.Basic.RandomCylindersImage
- Example.Basic.SwarmPlot
- Example.Basic.TestFSS
- Example.Basic.ViolinPlot
- Example.Battery.SimulateAndPlot
- Example.Blender.RenderMesh
- Example.C.DivideByTwo
- Example.cellpose.SegmentImage
- Example.CGAL.CreateMeshFromImage
- Example.Convert.ParToDICOM
- Example.cupy.MinMaxFilterThickness
- Example.CV.Gauss
- Example.Dahl.LocalThickness
- Example.easyocr.ReadFloatFromImage
- Example.easyocr.ReadIntFromImage
- Example.easyocr.ReadStringFromImage
- Example.Elastix.ImageRegistration
- Example.Elastix.Transform
- Example.External.Excel
- Example.External.Gimp
- Example.External.Meshmixer
- Example.Generic.DefineCompressed
- Example.Generic.DefinePeel
- Example.Generic.GradeImage
- Example.Generic.GradeImagePair
- Example.Generic.InstructionsTest
- Example.ImageJ.Kuwahara
- Example.ImageJ.Segmentation
- Example.Itk.AnisotropicDiffusion
- Example.Itk.ImageRegistration
- Example.Itk.Otsu
- Example.Julia.PlotXY
- Example.KerasTF.TrainUNet
- Example.MaskRCNN.SegmentImage2D
- Example.MaskRCNN.Train
- Example.Matlab.PlotXY
- Example.Mitsuba.RenderMesh
- Example.Mitsuba.RenderRandomParticles
- Example.napari.DrawSegments
- Example.napari.LineLayer
- Example.napari.ViewImage
- Example.nnunet.ExportModel
- Example.nnunet.ImportModel
- Example.nnunet.InstallDataset
- Example.nnunet.SegmentImage
- Example.nnunet.Train
- Example.nnunet2.ExportModel
- Example.nnunet2.ImportModel
- Example.nnunet2.InstallDataset
- Example.nnunet2.SegmentImage
- Example.nnunet2.Train
- Example.numpy.FFT
- Example.numpy.FFT2D
- Example.numpy.HeightMapToVoxels
- Example.numpy.IntensityProjection
- Example.numpy.InverseFFT
- Example.numpy.PlateHeightProfile
- Example.numpy.SkeletonBranchpoints
- Example.numpy.SkeletonMeasure
- Example.numpy.SkeletonPrune
- Example.numpy.SliceGeometry
- Example.numpy.SliceGeometry2D
- Example.numpy.SlicePixelsMean
- Example.numpy.SlicePorosity
- Example.Octave.PlotXY
- Example.ORMIRXCT.JointSpaceWidth
- Example.ORMIRXCT.Thickness
- Example.Parametric.GaussMorphoSegment
- Example.Parametric.Morpho
- Example.Paraview.RenderImage
- Example.Paraview.RenderVTU
- Example.Qt.CustomDialog
- Example.Reference.Image
- Example.RScript.DescriptiveStat
- Example.RScript.HTMLDocument
- Example.RScript.PlotXY
- Example.SAM.SegmentImage
- Example.scipy.GaussianFilter
- Example.scipy.GeometricCharacteristics
- Example.scipy.MaskQuadrants
- Example.scipy.MedianFilter
- Example.scipy.MinMaxFilterThickness
- Example.scipy.VarianceFilter
- Example.skfmm.ShapeFromShading
- Example.skimage.ActiveContour
- Example.skimage.AddBorderSobel
- Example.skimage.ConvexHull
- Example.skimage.Frangi
- Example.skimage.Gauss
- Example.skimage.Hessian
- Example.skimage.HSV
- Example.skimage.LevelSets
- Example.skimage.LocalThresholding
- Example.skimage.Measure2D
- Example.skimage.MeasureInterface2D
- Example.skimage.Meijering
- Example.skimage.NonLocalMeansFilter
- Example.skimage.PeakLocalMaxima
- Example.skimage.Sato
- Example.skimage.Skeleton
- Example.skimage.Watershed
- Example.Slurm.SubmitViaSSH
- Example.stardist.Fluorescence2D
- Example.Timing.FileTransfer
- Example.TotalSegmentator.SegmentImage
- Example.VMS.ConvertTextFile
- Example.wx.CustomDialog
- Example.wx.ImportFromS3
- INAM.Data.DefineMicroscopySample
- INAM.Data.DefineMicroscopySampleRegion
- INAM.Data.DefineMicroscopyScan
- IPL.Standard.AlignInZ
- IPL.Standard.AlignToPlane
- IPL.Standard.AlignToPrincipalAxes
- IPL.Standard.AutocontourBone
- IPL.Standard.BoneDensitometry
- IPL.Standard.BoneImplantContactSurface
- IPL.Standard.CorticalBone
- IPL.Standard.CvtAim
- IPL.Standard.CvtDicom
- IPL.Standard.CvtStl
- IPL.Standard.Densitometry
- IPL.Standard.Dicom
- IPL.Standard.Midshaft
- IPL.Standard.Morphometry
- IPL.Standard.PoreAnalysis
- IPL.Standard.Qc1
- IPL.Standard.Qc2
- IPL.Standard.RotateAroundAxis
- IPL.Standard.ThSpN
- IPL.Standard.TrabecularBone
- IPL.Standard.TrabecularBoneAit
- IPL.Standard.TrabecularBoneFilled
- IPL.Standard.Transform
- IPL.Standard.Voi
- IPL.Standard.Voi2
- IPL.Standard.Voi3
- IPL.Standard.Voi4
- IPL.Standard.VolSurf
- Lucid.AFM.Detilt
- Lucid.AFM.ImportImage
- Lucid.Archive.ArchiveProject
- Lucid.Archive.RestoreArchivedProject
- Lucid.Bitmap.AsFile
- Lucid.Bitmap.AsImage
- Lucid.Bitmap.Import
- Lucid.Bone.FractalDimension
- Lucid.Bone.JointSpaceWidth
- Lucid.Bone.MidshaftCurvature
- Lucid.Core.AssignSegmentsNames
- Lucid.Core.AutoVOI
- Lucid.Core.CenterOfMass
- Lucid.Core.Combine
- Lucid.Core.CombineFilteredSegments
- Lucid.Core.Compare
- Lucid.Core.CompareToMask
- Lucid.Core.CompLabelingClearBorder
- Lucid.Core.CompLabelingImagePixelsMean
- Lucid.Core.CompLabelingIntersect
- Lucid.Core.CompLabelingMain
- Lucid.Core.CompLabelingMeasure
- Lucid.Core.CompLabelingMeasure2D
- Lucid.Core.CompLabelingRange
- Lucid.Core.CompLabelingRank
- Lucid.Core.CompLabelingSpawn
- Lucid.Core.ComponentLabeling
- Lucid.Core.ConvertType
- Lucid.Core.Corticalis
- Lucid.Core.CountSegmentsPixels
- Lucid.Core.CreateCylinderMask
- Lucid.Core.CreateMaskFromImageVOI
- Lucid.Core.CreateMaskFromRotatedImageVOI
- Lucid.Core.CreateMaskFromSnapshotClipPlanes
- Lucid.Core.CreateShell
- Lucid.Core.CropImageVOI
- Lucid.Core.CropRotatedImageVOI
- Lucid.Core.CropSlice
- Lucid.Core.DefineAndCropImageVOI
- Lucid.Core.DefineSegmentationAndThreshold
- Lucid.Core.DegreeOfAnisotropyMIL
- Lucid.Core.DenoisingFilter
- Lucid.Core.Despeckle
- Lucid.Core.DownBy2
- Lucid.Core.DrawSegmentsWithClassic
- Lucid.Core.DrawSegmentsWithSAM
- Lucid.Core.EigHessian
- Lucid.Core.Extract
- Lucid.Core.ExtractByDistance
- Lucid.Core.FillCavities
- Lucid.Core.Gauss
- Lucid.Core.HistogramMatching
- Lucid.Core.HistogramPlot
- Lucid.Core.IterativeThresholdMainComponents
- Lucid.Core.LaplaceHamming
- Lucid.Core.LocalAugment
- Lucid.Core.LocalOrientation
- Lucid.Core.LocalSMI
- Lucid.Core.LocalThresholdingInteractive
- Lucid.Core.LogicalAnd
- Lucid.Core.LogicalAndNot
- Lucid.Core.LogicalInvert
- Lucid.Core.LogicalOr
- Lucid.Core.LogicalXOr
- Lucid.Core.MapPixelsFormula
- Lucid.Core.Mask
- Lucid.Core.MaskRotatedImageVOI
- Lucid.Core.MipTiledConversion
- Lucid.Core.Mirror
- Lucid.Core.MomentOfInertiaTensor
- Lucid.Core.MorphClose
- Lucid.Core.MorphCloseInteractive
- Lucid.Core.MorphDilate
- Lucid.Core.MorphDilateErodeInteractive
- Lucid.Core.MorphErode
- Lucid.Core.MorphOpen
- Lucid.Core.MorphOpenInteractive
- Lucid.Core.NearestSeedSegment
- Lucid.Core.PadImage
- Lucid.Core.Percentiles
- Lucid.Core.Rotate90
- Lucid.Core.Scale
- Lucid.Core.SDT
- Lucid.Core.SegmentsBoundingVOI
- Lucid.Core.SegmentsObjectByName
- Lucid.Core.SegmentsSimilarityScore
- Lucid.Core.SplitShell
- Lucid.Core.StackImages
- Lucid.Core.StructNumber
- Lucid.Core.Thickness
- Lucid.Core.ThicknessGPU
- Lucid.Core.Thinning
- Lucid.Core.Threshold
- Lucid.Core.ThresholdAuto
- Lucid.Core.ThresholdHysteresis
- Lucid.Core.ThresholdMultiOtsu
- Lucid.Core.Transpose
- Lucid.Core.UpBy2
- Lucid.CSV.AddBinningColumn
- Lucid.CSV.AddConstantColumn
- Lucid.CSV.AddFormulaColumn
- Lucid.CSV.BoolFromCell
- Lucid.CSV.ConcatTableSequence
- Lucid.CSV.CreateRowTaskType
- Lucid.CSV.DescriptiveStatisticsOfColumn
- Lucid.CSV.EqDiameterAndShape
- Lucid.CSV.Export
- Lucid.CSV.FilterRowsByLineNumber
- Lucid.CSV.FilterRowsByRange
- Lucid.CSV.FilterRowsByStringValue
- Lucid.CSV.FloatFromCell
- Lucid.CSV.FromFloatSequence
- Lucid.CSV.ImagePixelsAsTable
- Lucid.CSV.ImportFromForeignFile
- Lucid.CSV.IntFromCell
- Lucid.CSV.JoinTables
- Lucid.CSV.LookupImagePixels
- Lucid.CSV.MapImagePixels
- Lucid.CSV.MinMaxRows
- Lucid.CSV.pandasgui
- Lucid.CSV.RecordLinkage
- Lucid.CSV.RenameColumns
- Lucid.CSV.ReorderColumns
- Lucid.CSV.SpawnRowRuns
- Lucid.CSV.StringFromCell
- Lucid.Entity.CreateForImage
- Lucid.Entity.CreateForImageVOI
- Lucid.Entity.GetDatabaseBool
- Lucid.Entity.GetDatabaseFloat
- Lucid.Entity.GetDatabaseInt
- Lucid.Entity.GetDatabaseString
- Lucid.Entity.GetRunEntity
- Lucid.Entity.PrintQR
- Lucid.Entity.QR
- Lucid.Entity.SetRunEntity
- Lucid.Entity.StringInSequence
- Lucid.Histomorphometry.Calculate
- Lucid.Mesh.AddVertexAttribute
- Lucid.Mesh.CalcDownsamplingFactor
- Lucid.Mesh.Combine
- Lucid.Mesh.Create
- Lucid.Mesh.CreateMultiObject
- Lucid.Mesh.Export
- Lucid.Mesh.Import
- Lucid.Mesh.Render
- Lucid.Mesh.SegmentsSnapshot
- Lucid.Mesh.Smooth
- Lucid.mSEM.SpawnTiles
- Lucid.mSEM.TileParameters
- Lucid.Registration.CreateStitchingTable
- Lucid.Registration.PhaseCorrelation
- Lucid.Registration.StitchImages3D
- Lucid.Registration.StitchRegistrationResult2D
- Lucid.Spectra.AsCSV
- Lucid.Spectra.AsImage
- Lucid.Spectra.BaselineCorrection
- Lucid.Spectra.Crop
- Lucid.Spectra.CropVOI2D
- Lucid.Spectra.FindPeaks
- Lucid.Spectra.FitLorentzian
- Lucid.Spectra.ICA
- Lucid.Spectra.Import
- Lucid.Spectra.Integration
- Lucid.Spectra.IntegrationMap
- Lucid.Spectra.LogTransform
- Lucid.Spectra.Mask
- Lucid.Spectra.Normalization
- Lucid.Spectra.PCA
- Lucid.Spectra.PeakArea
- Lucid.Spectra.PeakAreaRatio
- Lucid.Spectra.Plot
- Lucid.Spectra.RamanShift
- Lucid.Spectra.RemoveSpikes
- Lucid.Spectra.SavitzkyGolaySmoothing
- Lucid.Spectra.SimilarityMap
- Lucid.Spectra.SingleSpectrum
- Lucid.Spectra.SpawnLIFDatasetImport
- Lucid.Spectra.Subtract
- Lucid.Statistics.ANOVA
- Lucid.Statistics.CombinePValues
- Lucid.Statistics.ContingencyTable
- Lucid.Statistics.FloatDifference
- Lucid.Statistics.ImagePixels
- Lucid.Statistics.ImagePixelsMean
- Lucid.Statistics.ImagePixelsMinMax
- Lucid.Statistics.ImagePixelsSum
- Lucid.Statistics.ImagePixelsVariance
- Lucid.Statistics.LDA
- Lucid.Statistics.MannWhitney
- Lucid.Statistics.MeanErrorPaired
- Lucid.Statistics.PCA
- Lucid.Statistics.PearsonCorrelation
- Lucid.Statistics.TTestIndependent
- Lucid.Statistics.TTestOneSequence
- Lucid.Statistics.TTestPaired
- Lucid.Statistics.Tukey
- Lucid.Statistics.WilcoxonRankSum
- Lucid.Statistics.WilcoxonSignedRank
- Lucid.Util.AdjustImageVOI
- Lucid.Util.AdjustRotatedImageVOI
- Lucid.Util.ArchiveRunResults
- Lucid.Util.AssignImageCalibration
- Lucid.Util.BoolFormula
- Lucid.Util.CheckCPU
- Lucid.Util.ConvertUnit
- Lucid.Util.ExistingGOBJForISQ
- Lucid.Util.ExportImageToUserDataFolder
- Lucid.Util.ExtractStringPart
- Lucid.Util.Extrude2DImage
- Lucid.Util.Fail
- Lucid.Util.FileHash
- Lucid.Util.FloatFormula
- Lucid.Util.FormatString
- Lucid.Util.GetFilename
- Lucid.Util.ImageVOIFromMargin
- Lucid.Util.ImageVOIFromSourceAndTargetImages
- Lucid.Util.ImageVOIProperties
- Lucid.Util.ImportImageFromForeignFile
- Lucid.Util.ImportImageFromRaw
- Lucid.Util.IntFormula
- Lucid.Util.LogAllMetadata
- Lucid.Util.ObsoleteRun
- Lucid.Util.ParseBool
- Lucid.Util.ParseFloat
- Lucid.Util.ParseInt
- Lucid.Util.ReadOMNIMetadata
- Lucid.Util.ReassignContours
- Lucid.Util.ReassignImageVOI
- Lucid.Util.ReassignRotatedImageVOI
- Lucid.Util.ReassignSnapshot
- Lucid.Util.RelativeUserDataFolder
- Lucid.Util.RelativeUserDataForeignFile
- Lucid.Util.RenameImage
- Lucid.Util.RenderDXConfig
- Lucid.Util.RotatedImageVOIFromRegistrationPoints
- Lucid.Util.RotatedImageVOIFromRegistrationResult
- Lucid.Util.RotatedImageVOIInverted
- Lucid.Util.RunJupyterNotebook
- Lucid.Util.RunName
- Lucid.Util.ScanQR
- Lucid.Util.SearchFolderFilesBySuffix
- Lucid.Util.SearchFolderImageSegmentPairs
- Lucid.Util.SearchImageInSequence
- Lucid.Util.SelectFileFTP
- Lucid.Util.SetRunName
- Lucid.Util.SnapshotColorBarOverlay
- Lucid.Util.SnapshotImageSlice
- Lucid.Util.SpawnImages
- Lucid.Util.SpawnSequence
- Lucid.Util.SpawnSubFolders
- Lucid.Util.SpawnVOIGrid
- Lucid.Util.StackSliceImageSequence
- Lucid.Util.StringFormula
- Lucid.Util.UpgradeAllTasks
- Lucid.Video.AdjustSpeed
- Lucid.Video.CombineConcat
- Lucid.Video.CombineMosaic
- Lucid.Video.ImageSlice
- Lucid.Video.ImportFromForeignFile
- Lucid.Video.Loop
- Lucid.Video.OverlayBitmap
- Lucid.Video.OverlayText
- Lucid.Video.RenderImageSnapshotAnimation
- Lucid.Video.RenderMeshRotation
- Lucid.Video.RenderMeshSnapshotAnimation
- Lucid.Video.RenderSegmentsMorphingAnimation
- MicroFE.FEA.Post
- MicroFE.FEA.Solve
- ParOSol.FEA.Solve
- PerkinElmer.Util.CalculateImageCalibration
- Scanco.IPL.CompLabelRank
- Scanco.IPL.CompLabelSize
- Scanco.IPL.ComponentLabeling
- Scanco.IPL.ContoursMeasure
- Scanco.IPL.ContoursToSegments
- Scanco.IPL.ConvertFromOMNI
- Scanco.IPL.ConvertType
- Scanco.IPL.CropImageVOI
- Scanco.IPL.CropSlice
- Scanco.IPL.CustomSegmentationScript
- Scanco.IPL.DefineAndCropImageVOI
- Scanco.IPL.EvalConnect
- Scanco.IPL.EvalCorticalBone
- Scanco.IPL.EvalMesh
- Scanco.IPL.EvalMeshRender
- Scanco.IPL.EvalMomentOfInertia2D
- Scanco.IPL.EvalPixelsGrayscale
- Scanco.IPL.EvalPixelsGrayscaleStats
- Scanco.IPL.EvalPixelsSegments
- Scanco.IPL.EvalSeparation
- Scanco.IPL.EvalStructNumber
- Scanco.IPL.EvalThickness
- Scanco.IPL.EvalTrabecularBone
- Scanco.IPL.ExportMeshFEM
- Scanco.IPL.GaussSegmentation
- Scanco.IPL.ImageRegistration
- Scanco.IPL.Invert
- Scanco.IPL.ISQToAIM
- Scanco.IPL.LaplaceHamming
- Scanco.IPL.MedianFilter
- Scanco.IPL.MeshGeneration
- Scanco.IPL.MorphoClosing
- Scanco.IPL.MorphoDilation
- Scanco.IPL.MorphoErosion
- Scanco.IPL.MorphoOpening
- Scanco.IPL.OtsuSegmentation
- Scanco.IPL.RotateXY
- Scanco.IPL.SegmentsToContours
- Scanco.IPL.Subtract
- Scanco.IPL.Threshold
- Scanco.ISQ.AdjustFiles
- Scanco.ISQ.ReadHeader
- Scanco.Uct.RayBatch
- Scanco.Uct.Reconstruction
- Skyscan.Util.CalculateImageCalibration
- Skyscan.Util.ReadDynamicRangeFromNReconLog
- SLF.Data.DefineSnowProfile
- SLF.Data.DefineSnowProfileBlockSample
- SLF.Data.DefineSnowProfileCylinderSample
- UKE.IPL.AutoContouring
- UKE.IPL.XTEval
- UKER.IPL.EvalCorticalBone
- UKER.IPL.EvalTrabecularBone
- UKER.IPL.EvalWholeBone
- XF.Data.AddBitmap
- XF.Data.AddCSV
- XF.Data.AddEntity
- XF.Data.AddForeignFile
- XF.Data.AddImage
- XF.Data.AddImageOfSample
- XF.Data.AddImageVOI
- XF.Data.AddMesh
- XF.Data.AddSequence
- XF.Data.AddUserDataFolder
- XF.Data.AddVideo
- XF.Data.ComponentLabelParameters
- XF.Data.DefineBool
- XF.Data.DefineFloat
- XF.Data.DefineInt
- XF.Data.DefineString
- XF.Data.DicomQueryRetrieve
- XF.Data.ScanImage
- XF.Data.SelectBitmap
- XF.Data.SelectCSV
- XF.Data.SelectEntity
- XF.Data.SelectForeignFile
- XF.Data.SelectImage
- XF.Data.SelectImagePairList
- XF.Data.SelectImageVOI
- XF.Data.SelectMesh
- XF.Data.SelectSample
- XF.Data.SelectSequence
- XF.Data.SelectSnapshot
- XF.Data.SelectSnapshotAnimation
- XF.Data.SelectSWAPRawProjection
- XF.Data.SelectUserDataFolder
- XF.Data.SelectVideo
- XF.Interactive.ConfirmImage
- XF.Interactive.ConfirmImagePair
- XF.Interactive.CreateContours
- XF.Interactive.CreateImageCompareSnapshot
- XF.Interactive.CreateImageCompareSnapshotAnimation
- XF.Interactive.CreateImageSnapshot
- XF.Interactive.CreateImageSnapshotAnimation
- XF.Interactive.CreateMeshSnapshot
- XF.Interactive.CreateMeshSnapshotAnimation
- XF.Interactive.DefineGaussSegmentation
- XF.Interactive.DefineImageRotation
- XF.Interactive.DefineImageVOI
- XF.Interactive.DefineRegistrationPoints
- XF.Interactive.DefineRotatedImageVOI
- XF.Interactive.DefineSegmentation
- XF.Interactive.DefineSegmentationRGB
- XF.Interactive.DevelopCustomSegmentationScript
- XF.Interactive.DrawSegments
- XF.Interactive.EditNewTable
- XF.Interactive.EditTable
- XF.Interactive.MeasureLengths
- XF.Interactive.MeasurePoints
- XF.Interactive.RegisterImages2D
- XF.Interactive.RegisterImages3D
- XF.Interactive.RegisterMeshAndImage2D
- XF.Reporting.Chart
- XF.Reporting.Table
- Zeiss.TXM.ReadHeader
- Dependency Packages
- Python Library Reference
- Support Service Plans